Start your day with a burst of flavor and nutrition with these breakfast egg muffins. Perfect for busy mornings, these muffins are packed with eggs, bell peppers, onions, and cheese. They are easy to make and can be customized with your favorite ingredients.
If you don't usually keep bell peppers or shredded cheese in your kitchen, you might need to pick them up at the supermarket. Bell peppers add a sweet crunch, while shredded cheese brings a creamy texture and rich flavor to the muffins.

Ingredients For Breakfast Egg Muffins Recipe
Eggs: The base of the muffins, providing protein and structure.
Milk: Adds creaminess and helps to blend the ingredients.
Bell peppers: Adds color, crunch, and a slight sweetness.
Onions: Provides a savory depth of flavor.
Shredded cheese: Melts into the muffins, adding richness and a gooey texture.
Salt: Enhances the overall flavor of the muffins.
Black pepper: Adds a hint of spice and balances the flavors.
Technique Tip for Making Egg Muffins
To ensure your egg muffins come out perfectly fluffy, avoid overmixing the eggs and milk. Whisk just until combined to incorporate air, which will help the muffins rise nicely. Additionally, finely dice the bell peppers and onions to ensure even distribution and a consistent texture throughout each bite.
Suggested Side Dishes
Alternative Ingredients
eggs - Substitute with egg whites: For a lower cholesterol option, use egg whites instead of whole eggs.
eggs - Substitute with silken tofu: For a vegan alternative, silken tofu can mimic the texture of eggs.
milk - Substitute with almond milk: Almond milk is a dairy-free alternative that works well in this recipe.
milk - Substitute with coconut milk: Coconut milk adds a slight sweetness and richness to the muffins.
diced bell peppers - Substitute with diced zucchini: Zucchini provides a similar texture and moisture content.
diced bell peppers - Substitute with diced tomatoes: Tomatoes add a juicy and slightly tangy flavor.
diced onions - Substitute with green onions: Green onions offer a milder flavor and a bit of color.
diced onions - Substitute with shallots: Shallots provide a more delicate and sweet onion flavor.
shredded cheese - Substitute with nutritional yeast: Nutritional yeast gives a cheesy flavor without dairy, suitable for vegans.
shredded cheese - Substitute with vegan cheese: Vegan cheese melts well and provides a similar texture and taste.
salt - Substitute with soy sauce: Soy sauce adds umami and a bit of saltiness.
salt - Substitute with sea salt: Sea salt can be used as a direct replacement for regular salt.
black pepper - Substitute with white pepper: White pepper has a milder flavor and is less visually noticeable.
black pepper - Substitute with cayenne pepper: Cayenne pepper adds a bit of heat and spice to the muffins.
Other Alternative Recipes Similar to Egg Muffins
How to Store/Freeze Your Egg Muffins
Allow the egg muffins to cool completely before storing. This helps prevent condensation, which can make them soggy.
For short-term storage, place the egg muffins in an airtight container. Line the container with a paper towel to absorb any excess moisture. Store in the refrigerator for up to 4 days.
If you plan to freeze the egg muffins, wrap each muffin individually in plastic wrap or aluminum foil. This helps to maintain their freshness and prevents freezer burn.
Place the wrapped egg muffins in a resealable freezer bag or an airtight container. Label the bag or container with the date to keep track of their freshness.
When you're ready to enjoy a frozen egg muffin, remove it from the freezer and unwrap it. Reheat in the microwave for about 1-2 minutes, or until heated through. You can also reheat them in the oven at 350°F (175°C) for about 10-15 minutes.
For added convenience, consider freezing the egg muffins in a single layer on a baking sheet before transferring them to a freezer bag. This prevents them from sticking together and makes it easier to grab just one or two at a time.
How to Reheat Leftovers
Microwave: Place the egg muffins on a microwave-safe plate. Cover them with a damp paper towel to retain moisture. Heat on medium power for 30-60 seconds, or until warmed through. Be careful not to overheat, as this can make the eggs rubbery.
Oven: Preheat your oven to 350°F (175°C). Place the egg muffins on a baking sheet and cover them with aluminum foil to prevent them from drying out. Bake for 10-15 minutes, or until heated through. This method helps maintain the muffins' texture and flavor.
Toaster Oven: Set your toaster oven to 350°F (175°C). Place the egg muffins on a tray and cover with foil. Heat for about 10 minutes, or until warmed through. This is a great option for a quick and even reheat.
Air Fryer: Preheat your air fryer to 300°F (150°C). Place the egg muffins in the basket, ensuring they are not touching. Heat for 3-5 minutes, checking halfway through to ensure they are warming evenly. This method gives a slightly crispy exterior while keeping the inside moist.
Stovetop: Heat a non-stick skillet over medium-low heat. Add a small amount of butter or olive oil to the pan. Place the egg muffins in the skillet and cover with a lid. Heat for about 5 minutes, flipping halfway through, until warmed through. This method adds a bit of extra flavor from the butter or olive oil.
Best Tools for This Recipe
Oven: Used to bake the egg muffins at the specified temperature of 375°F (190°C).
Muffin tin: Holds the egg mixture in individual portions for baking.
Whisk: Used to blend the eggs and milk together smoothly.
Mixing bowl: A large bowl to combine all the ingredients.
Measuring cups: Used to measure the milk, diced bell peppers, diced onions, and shredded cheese accurately.
Measuring spoons: Used to measure the salt and black pepper.
Knife: Used to dice the bell peppers and onions.
Cutting board: Provides a safe surface for chopping the vegetables.
Cooking spray: Used to grease the muffin tin to prevent the egg muffins from sticking.
Spatula: Helps to mix the ingredients thoroughly and to remove the muffins from the tin after baking.
How to Save Time on Making Egg Muffins
Prep ingredients ahead: Dice bell peppers and onions the night before to save time in the morning.
Use a measuring cup: Pour the egg mixture into the muffin tin using a measuring cup for even distribution and less mess.
Line the muffin tin: Use silicone or paper liners to make cleanup easier and save time.
Batch cooking: Double the recipe and freeze the extra egg muffins for quick breakfasts throughout the week.
Pre-shredded cheese: Use pre-shredded cheese to cut down on prep time.

Breakfast Egg Muffins Recipe
Ingredients
Main Ingredients
- 6 Eggs
- ¼ cup Milk
- ½ cup Diced bell peppers
- ½ cup Diced onions
- ½ cup Shredded cheese
- ¼ teaspoon Salt
- ¼ teaspoon Black pepper
Instructions
- Preheat your oven to 375°F (190°C). Grease a muffin tin.
- In a mixing bowl, whisk together the eggs and milk.
- Add the diced bell peppers, onions, shredded cheese, salt, and black pepper. Mix well.
- Pour the mixture evenly into the muffin tin cups.
- Bake for 20 minutes or until the egg muffins are set and lightly golden.
- Let them cool for a few minutes before removing from the tin. Serve warm.
Nutritional Value
Keywords
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